Samtools fastq
「Samtools fastq」熱門搜尋資訊
「Samtools fastq」文章包含有：「samtools」、「samtools(1)manualpage」、「Samtools」、「ConvertingBAMtofastq」、「samtoolsfastafastq」、「FASTQtoBAMCRAM」、「samtoolsfastqcouldmergepairmembersandoutputjusta...」、「FASTQtoBAMtoCRAMtoFASTQ」、「samtoolsfastqcompression」、「samtoolsfastqtoenablefilterbytag"」
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samtools
http://www.htslib.org
NAME. samtools-fasta, samtools-fastq – converts a SAM/BAM/CRAM file to FASTA or FASTQ. SYNOPSIS. samtools fastq [options] in.bam
samtools(1) manual page
http://www.htslib.org
Converts one or more FASTQ files to unaligned SAM, BAM or CRAM. These formats offer a richer capability of tracking sample meta-data via the SAM ...
Samtools
http://www.htslib.org
FASTQ to BAM / CRAM · WGS/WES Mapping to Variant Calls · Filtering of VCF Files · Using CRAM within Samtools · Documentation.
Converting BAM to fastq
https://www.metagenomics.wiki
sort paired read alignment .bam file (sort by name -n). samtools sort -n SAMPLE.bam -o SAMPLE_sorted.bam. # save fastq reads in separate R1 and R2 files.
samtools fasta fastq
https://manpages.ubuntu.com
DESCRIPTION. Converts a BAM or CRAM into either FASTQ or FASTA format depending on the command invoked. The files will be automatically compressed if the file ...
FASTQ to BAM CRAM
http://www.htslib.org
FASTQ to BAM / CRAM · Alignment / mapping to a known reference · Mapping · Fixing of mate-pair issues · Marking duplicates (part 1: preparation) · Sorting to ...
samtools fastq could merge pair members and output just a ...
https://github.com
The intention of samtools fastq is very much to reverse the alignment process. Ie to take an aligned file and reproduce something akin to the ...
FASTQ to BAM to CRAM to FASTQ
https://www.biostars.org
In the conversion from CRAM to FASTQ, I have some issues. I have this code: samtools fastq -T $bwarefgenomepath ART03_FINAL.cram > BACKUP.fastq ...
samtools fastq compression
https://www.biostars.org
I'm not sure if I am giving the right command for compression, since the .gz file is huge. Does this command look ok?
samtools fastq to enable filter by tag "
https://github.com
The fastq command has all the bells and whistles, but view can also output basic FASTQ that may suffice for your purposes. So you might try ...